Genome-wide analysis of basic leucine zipper transcription factor families in Arabidopsis thaliana, Oryza sativa and Populus trichocarpa

                Qian Ji, Liang-sheng Zhang, Yi-fei Wang, Jian Wang
                Journal of Shanghai University (English Edition), 2009, 13(2): 174-182  DOI: 10.1007/s11741-009-0216-3;      追溯原文......本站官方QQ群:62473826
                basic leucine zipper (bZIP); phylogenetic analysis; dimerization properties

                The basic leucine zipper (bZIP) transcription factors form a large gene family that is important in pathogen defense, light and stress signaling, etc. The Completed whole genome sequences of model plants Arabidopsis (Arabidopsis thaliana), rice (Oryza sativa) and poplar (Populus trichocarpa) constitute a valuable resource for genome-wide analysis and genomic comparative analysis, as they are representatives of the two major evolutionary lineages within the angiosperms: the monocotyledons and the dicotyledons. In this study, bioinformatics analysis identified 74, 89 and 88 bZIP genes respectively in Arabidopsis, rice and poplar. Moreover, a comprehensive overview of this gene family is presented, including the gene structure, phylogeny, chromosome distribution, conserved motifs. As a result, the plant bZIPs were organized into 10 subfamilies on basis of phylogenetic relationship. Gene duplication events during the family evolution history were also investigated. And it was further concluded that chromosomal/segmental duplication might have played a key role in gene expansion of bZIP gene family.

                擬南芥、水稻和毛果楊中堿性亮氨酸拉鏈轉錄因子家族全基因組分析

                堿性亮氨酸拉鏈(bZIP)轉錄因子形成一個大的基因家族,其對病原菌防御、光和脅迫信號傳導等進程很重要。模式植物擬南芥、水稻和


                基因列表
                  bZIP轉錄因子 OsbZIP22
                  bZIP轉錄因子 RISBZ1; OsbZIP58
                  bZIP轉錄因子; TGA因子 rTGA2.1; OsbZIP63; OsNIF1
                  bZIP轉錄激活因子 RF2a; OsbZIP75
                  bZIP轉錄激活因子 RF2b; OsbZIP30
                  bZIP轉錄因子 OsbZIP23
                  bZIP轉錄因子 OsbZIP72
                  bZIP轉錄因子; ABA應答元件結合因子 OsABF1; OsbZIP12
                  bZIP轉錄因子; ABRE結合因子 OSBZ8; OsbZIP05; OsbZIP5
                  bZIP轉錄因子;ABRE結合因子 OsABI5; OREB1; OsbZIP10
                  bZIP轉錄因子 OsbZIP21
                  bZIP轉錄因子 OsZIP-2a; OsbZIP80
                  bZIP轉錄因子 OsTRAB1; OsbZIP66
                  bZIP轉錄因子 OsbZIP50; OsbZIP74
                  bZIP轉錄因子 OsbZIP39
                  bZIP轉錄因子 OsbZIP60; O3; OPAQUE3
                  bZIP轉錄因子; ABRE結合蛋白 OsAREB1; OsbZIP46; OsABF2; ABL1; OsAREB8
                  bZIP轉錄因子 OsbZIP52; RISBZ5
                  bZIP轉錄因子; Ehd1調控因子; HY5同源基因 OsRE1; OsbZIP01; OsHY5L3; OUR1; OsbZIP1
                  bZIP轉錄因子 OsbZIP02
                  bZIP轉錄因子 OsbZIP03; OsHBP1b; OsTGA5; rTGA2.3; OsNIF3
                  bZIP轉錄因子 OsbZIP04
                  bZIP轉錄因子 OsbZIP06
                  bZIP轉錄因子 OsbZIP07
                  bZIP轉錄因子 OsTGAL1; OsTGA2; OsbZIP28; OsbZIP08
                  bZIP轉錄因子; Hd3a結合抑制因子 OsbZIP09; HBF2
                  bZIP轉錄因子 OsbZIP11; OsLG2
                  bZIP轉錄因子 OsbZIP13
                  bZIP轉錄因子 OsbZIP14
                  bZIP轉錄因子 OsbZIP15; RISBZ4
                  bZIP轉錄因子 OsbZIP16
                  bZIP轉錄因子 OsbZIP17
                  bZIP轉錄因子 OsbZIP19
                  bZIP轉錄因子 OsbZIP20; RITA-1; RISBZ3
                  bZIP轉錄因子 OsbZIP86; OsZIP-1a
                  bZIP轉錄因子 OsbZIP24
                  bZIP轉錄因子 OsbZIP25
                  bZIP轉錄因子 OsbZIP26
                  bZIP轉錄因子 OsbZIP27
                  bZIP轉錄因子 OsbZIP28; OsbZIP1; OsTGA3
                  bZIP轉錄因子 OsbZIP29
                  bZIP轉錄因子 OsbZIP31
                  bZIP轉錄因子 OsbZIP32
                  bZIP轉錄因子 REB; OsbZIP33; RISBZ2
                  bZIP轉錄因子 OsbZIP34
                  bZIP轉錄因子 OsbZIP35
                  bZIP轉錄因子 OsbZIP36
                  bZIP轉錄因子 OsTGAP1; OsbZIP37
                  bZIP轉錄因子 LIP19; OsbZIP38
                  bZIP轉錄因子 OsOBF1; OsbZIP87
                  bZIP轉錄因子; 耐旱性 EDT1; OsbZIP40
                  TGA轉錄因子; bZIP轉錄因子 OsTGA1; OsbZIP41; OsLG2L
                  bZIP轉錄因子 OsbZIP42; HBF1
                  bZIP轉錄因子 OsbZIP43
                  bZIP轉錄因子 OsbZIP44; OsbZIP50
                  bZIP轉錄因子 OsbZIP45
                  bZIP轉錄因子 OsbZIP47
                  bZIP轉錄因子; HY5同源基因 OsbZIP48; OsHY5L2
                  bZIP轉錄因子 OsbZIP49
                  bZIP轉錄因子 OsbZIP51
                  bZIP轉錄因子 OsbZIP53; APIP5; OsbZIP48
                  bZIP轉錄因子 OsbZIP54
                  bZIP轉錄因子 OsFD2; OsbZIP55
                  bZIP轉錄因子 OsbZIP56
                  bZIP轉錄因子 OsbZIP57
                  bZIP轉錄因子 OsbZIP59
                  bZIP轉錄因子 OsbZIP61
                  bZIP轉錄因子 OsbZIP62; OsFD7
                  bZIP轉錄因子 OsbZIP64
                  bZIP轉錄因子 OsbZIP65
                  bZIP轉錄因子 OsbZIP67
                  bZIP轉錄因子 OsbZIP68
                  bZIP轉錄因子 OsbZIP69; OsFD4
                  bZIP轉錄因子 OsbZIP70
                  bZIP轉錄因子 OsbZIP71
                  bZIP轉錄因子; 白葉枯病易感基因 OsbZIP73; OsTFX1
                  bZIP轉錄因子 OsTGA10; OsbZIP74
                  bZIP轉錄因子 OsbZIP76
                  bZIP轉錄因子 OsFD1; OsbZIP77
                  bZIP轉錄因子 OsbZIP78
                  bZIP轉錄因子 OsbZIP79
                  bZIP轉錄因子 OsbZIP81
                  bZIP轉錄因子 OsbZIP82
                  bZIP轉錄因子 OsbZIP83; TGAL11
                  bZIP轉錄因子 OsbZIP84
                  bZIP轉錄因子 OsbZIP85
                  bZIP轉錄因子 OsbZIP88
                  bZIP轉錄因子 OsbZIP89
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